PROCOV report

protein model: JTT
input sequences: HSP70-gb_out432PHYML
input tree: HSP70-gb_out432PHYML.tree.retree
input option file: ../OLDversion/Options/general.opt

34 species, 432 sites

Input number of gamma categories: 4
Initial gamma shape parameter: 1.0000	Estimated Gamma shape parameter: 1.9081
Initial covarion1: 1.0000	Estimated covarion1 parameter: 0.5498
Initial covarion2 parameter: 1.0000	Estimated covarion2 parameter: 0.4011
Initial covarion3 parameter: 1.0000	Estimated covarion3 parameter: 0.0000
Initial proportion of covarions: 0.5000	Estimated proportion of covarions: 0.8909


maximum log likelihood: -16064.8669827525

(((((((((DNAK_CLOA:0.14845,(DNAK_BACM:0.22797,DNAK_METM:0.19774):0.03706):0.01993,(((DNAK_GUIT:0.08017,DNAK_PAVL:0.13113):0.04656,HSS_PEA:0.17105):0.0163,DNK_SYNY:0.07796):0.21223):0.03182,(DNAK_HALM:0.42408,(DNAK_MYCT:0.12795,DNAK_STRC:0.12724):0.14848):0.05593):0.01689,((((((HS_TRYCR:0.35401,(HS_YEASTa:0.12575,HSM_SCHPO:0.15405):0.16116):0.05332,HSE_DROME:0.18731):0.05035,HSM_PHAVU:0.23246):0.04610,((DNAK_CAUC:0.13868,DNAK_BRUO:0.12095):0.04118,DNAK_ECOL:0.23699):0.03195):0.05788,(DNAK_BORB:0.16323,DNAK_CHLP:0.26997):0.06851):0.00970,HSCA_ECOL:1.1806):0.0193):0.32564,(GR_HUMAN:0.13255,(GR_SCHPO:0.10661,GR_KLULA:0.18033):0.10527):0.08235):0.1108,(HSC_TRYBB:0.83347,HS_YEASTb:0.35031):0.07468):0.01056,((((HS_PLACB:0.1655,HS_BRELC:0.15237):0.02616,HS_DAUCA:0.17108):0.02299,HS_BRUMA:0.07805):0.04925,HS_PARLI:0.20017):0.0175):1.54016,HS_YEASTc:1.01599):0.13196,(HS_HUMAN:0.66332,YLA_CAEEL:0.71542):0.13196);

(running time : 49 minutes, 10 seconds)