Cold Manual 1.0.0
Table of Contents
Cold version 1.1.0
1 Invoking Cold
1.1 Model Options:
1.2 Data Options:
1.3 Starting Options:
1.4 Running Options:
1.5 Output Options:
1.6 Debugging and Status Options:
1.7 Technical Options
2 Output
2.1 Status and Debugging Output
2.2 Final Output
3 File Format
3.1 Trees
3.2 Data
3.3 Matrices
3.4 Initial Parameters
3.5 Output Templates
3.6 Variables
3.7 Mixture
3.8 Models
3.9 State File
4 File Searching
4.1 Factors Affecting File Search
4.2 Changing the Search Path
4.2.1 The
-f
option
5 Installing Cold
5.1 Configuration Macros
5.2 Other make variables that could be set by the user
5.3 Other make options available
5.4 Choosing the Number of Threads
5.5 Possible installation problems:
6 Utilities included with Cold
6.1 readmatricesfromcols
6.2 reordermatrix
6.3 summats
6.4 stripambiguous
Appendix A GNU Free Documentation License
Index
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Cold version 1.1.0
This is the manual for Cold version 1.1.0.
Invoking Cold
: Command-line options for running Cold.
Output
: The output produced by Cold.
File Format
: Information about the format of files used by Cold.
File Searching
: How to control where Cold searches for files.
Installation
: How to install Cold.
Utilities
: Utilities included with Cold.
GNU Free Documentation License
: Copying and Sharing this Manual
Index